% ----------------------------------------------------------------------
% LATEX TEMPLATE FOR PhD THESIS
% ----------------------------------------------------------------------
% based on Harish Bhanderi's PhD/MPhil template, then Uni Cambridge
% http://www-h.eng.cam.ac.uk/help/tpl/textprocessing/ThesisStyle/
% corrected and extended in 2007 by Jakob Suckale, then MPI-CBG PhD programme
% and made available through OpenWetWare.org - the free biology wiki
%: Style file for Latex
% Most style definitions are in the external file PhDthesisPSnPDF.
% In this template package, it can be found in ./Latex/Classes/
\documentclass[twoside,11pt]{Latex/Classes/PhDthesisPSnPDF}
%: Macro file for Latex
% Macros help you summarise frequently repeated Latex commands.
% Here, they are placed in an external file /Latex/Macros/MacroFile1.tex
% An macro that you may use frequently is the figuremacro (see introduction.tex)
\include{Latex/Macros/MacroFile1}
%: ----------------------------------------------------------------------
%: TITLE PAGE: name, degree,..
% ----------------------------------------------------------------------
% below is to generate the title page with crest and author name
%if output to PDF then put the following in PDF header
\ifpdf
\pdfinfo { /Title (PhD and MPhil Thesis Classes)
/Creator (TeX)
/Producer (pdfTeX)
/Author (YourName your@email.net)
/CreationDate (D:YYYYMMDDhhmmss) %format D:YYYYMMDDhhmmss
/ModDate (D:YYYYMMDDhhmm)
/Subject (xyz)
/Keywords (add, your, keywords, here) }
\pdfcatalog { /PageMode (/UseOutlines)
/OpenAction (fitbh) }
\fi
\title{Title of your thesis}
% ----------------------------------------------------------------------
% The section below defines www links/email for author and institutions
% They will appear on the title page of the PDF and can be clicked
\ifpdf
\author{\href{mailto:your@email.net}{YourName}}
% \cityofbirth{born in XYZ} % uncomment this if your university requires this
% % If city of birth is required, also uncomment 2 sections in PhDthesisPSnPDF
% % Just search for the "city" and you'll find them.
\collegeordept{\href{http://www.something.net}{CollegeOrDepartment}}
\university{\href{http://www.something.net}{University}}
% The crest is a graphics file of the logo of your research institution.
% Place it in ./0_frontmatter/figures and specify the width
\crest{\includegraphics[width=4cm]{logo}}
% If you are not creating a PDF then use the following. The default is PDF.
\else
\author{YourName}
% \cityofbirth{born in XYZ}
\collegeordept{CollegeOrDept}
\university{University}
\crest{\includegraphics[width=4cm]{logo}}
\fi
%\renewcommand{\submittedtext}{change the default text here if needed}
\degree{Philosophi\ae Doctor (PhD), DPhil,..}
\degreedate{year month}
% ----------------------------------------------------------------------
% turn of those nasty overfull and underfull hboxes
\hbadness=10000
\hfuzz=50pt
%: --------------------------------------------------------------
%: FRONT MATTER: dedications, abstract,..
% --------------------------------------------------------------
\begin{document}
%\language{english}
% sets line spacing
\renewcommand\baselinestretch{1.2}
\baselineskip=18pt plus1pt
%: ----------------------- generate cover page ------------------------
\maketitle % command to print the title page with above variables
%: ----------------------- cover page back side ------------------------
% Your research institution may require reviewer names, etc.
% This cover back side is required by Dresden Med Fac; uncomment if needed.
\newpage
\vspace{10mm}
1. Reviewer: Name
\vspace{10mm}
2. Reviewer:
\vspace{20mm}
Day of the defense:
\vspace{20mm}
\hspace{70mm}Signature from head of PhD committee:
%: ----------------------- abstract ------------------------
% Your institution may have specific regulations if you need an abstract and where it is to be placed in the document. The default here is just after title.
\include{0_frontmatter/abstract}
% The original template provides and abstractseparate environment, if your institution requires them to be separate. I think it's easier to print the abstract from the complete thesis by restricting printing to the relevant page.
% \begin{abstractseparate}
% \input{Abstract/abstract}
% \end{abstractseparate}
%: ----------------------- tie in front matter ------------------------
\frontmatter
\include{0_frontmatter/dedication}
\include{0_frontmatter/acknowledgement}
%: ----------------------- contents ------------------------
\setcounter{secnumdepth}{3} % organisational level that receives a numbers
\setcounter{tocdepth}{3} % print table of contents for level 3
\tableofcontents % print the table of contents
% levels are: 0 - chapter, 1 - section, 2 - subsection, 3 - subsection
%: ----------------------- list of figures/tables ------------------------
\listoffigures % print list of figures
\listoftables % print list of tables
%: ----------------------- glossary ------------------------
% Tie in external source file for definitions: /0_frontmatter/glossary.tex
% Glossary entries can also be defined in the main text. See glossary.tex
%%% Glossary is not supported by ShareLaTeX now, sorry!!!
%\include{0_frontmatter/glossary}
%
%\begin{multicols}{2} % \begin{multicols}{#columns}[header text][space]
%\begin{footnotesize} % scriptsize(7) < footnotesize(8) < small (9) < normal (10)
%
%\printnomenclature[1.5cm] % [] = distance between entry and description
%\label{nom} % target name for links to glossary
%
%\end{footnotesize}
%\end{multicols}
%: --------------------------------------------------------------
%: MAIN DOCUMENT SECTION
% --------------------------------------------------------------
% the main text starts here with the introduction, 1st chapter,...
\mainmatter
\renewcommand{\chaptername}{} % uncomment to print only "1" not "Chapter 1"
%: ----------------------- subdocuments ------------------------
% Parts of the thesis are included below. Rename the files as required.
% But take care that the paths match. You can also change the order of appearance by moving the include commands.
\include{1_introduction/introduction} % background information
\include{2/aims} % aims of the project
\include{3/XYZ}
\include{4/XYZ}
\include{5/XYZ}
\include{6/XYZ}
\include{7/discussion} % discussion of results
\include{8/materials_methods} % description of lab methods
% --------------------------------------------------------------
%: BACK MATTER: appendices, refs,..
% --------------------------------------------------------------
% the back matter: appendix and references close the thesis
%: ----------------------- bibliography ------------------------
% The section below defines how references are listed and formatted
% The default below is 2 columns, small font, complete author names.
% Entries are also linked back to the page number in the text and to external URL if provided in the BibTex file.
% PhDbiblio-url2 = names small caps, title bold & hyperlinked, link to page
\begin{multicols}{2} % \begin{multicols}{ # columns}[ header text][ space]
\begin{tiny} % tiny(5) < scriptsize(7) < footnotesize(8) < small (9)
\bibliographystyle{Latex/Classes/PhDbiblio-url2} % Title is link if provided
\renewcommand{\bibname}{References} % changes the header; default: Bibliography
\bibliography{9_backmatter/references} % adjust this to fit your BibTex file
\end{tiny}
\end{multicols}
% --------------------------------------------------------------
% Various bibliography styles exit. Replace above style as desired.
% in-text refs: (1) (1; 2)
% ref list: alphabetical; author(s) in small caps; initials last name; page(s)
%\bibliographystyle{Latex/Classes/PhDbiblio-case} % title forced lower case
%\bibliographystyle{Latex/Classes/PhDbiblio-bold} % title as in bibtex but bold
%\bibliographystyle{Latex/Classes/PhDbiblio-url} % bold + www link if provided
%\bibliographystyle{Latex/Classes/jmb} % calls style file jmb.bst
% in-text refs: author (year) without brackets
% ref list: alphabetical; author(s) in normal font; last name, initials; page(s)
%\bibliographystyle{plainnat} % calls style file plainnat.bst
% in-text refs: author (year) without brackets
% (this works with package natbib)
% --------------------------------------------------------------
% according to Dresden med fac summary has to be at the end
%\include{0_frontmatter/abstract}
%: Declaration of originality
\include{9_backmatter/declaration}
\end{document}